PinMol – Design Molecular Beacons for Imaging

The input file used by PinMol is the ss-count file obtained after running mfold (RNA form) to fold the mRNA target of interest.

The ss-count should be saved as simple text file. PinMol will give an error if a formatted file is used (RTF, doc, etc.)

Download Links on GitHub for PinMol (text-based interface):

Win version

Mac version

Tutorial PinMol Mac